Make a 1map of contentmap of contentThis asks for one note in your flat maps folder that links every raw source and evergreen note with a plausible case for being on it. Your files stay where they are. for 2<theme><theme>You pick this, and it can be a theme, a knowledge area, or a project. That choice is how you stay in charge of how the vault is organized. in my 3<name of vault><name of vault>Naming the vault tells the agent where to look, and it's the cue that pulls in your standing instructions for maps. please.
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This short prompt works best when your agent has standing instructions for maps, such as a vault skill or a section in AGENTS.md. They should say to keep the folders flat, put a note on every map where there's a plausible case for it, link only to notes that exist, change as little as possible, have evergreen notes link to raw sources and never the other way, and ask you before adding a new map.