Programming languages and tools that I use in my day-to-day.
Python, HTML, CSS, bash scripting, git, Illustrator, Indesign, Photoshop
Specific Python packages that I have proficiency with.
Pandas, PyMC3 (Bayesian statistics), Flask, scikit-learn, scikit-image, Keras, NetworkX, Mesa
Concepts and ideas that I have mastery over.
network science, machine/deep learning, Bayesian inference, graphical models, agent-based models
Domain expertise gained during my education.
Microbiology, virology, biochemistry, molecular biology
pyjanitor: A Cleaner API for Cleaning Data (2019)Proceedings of the 18th Python in Science Conference (SciPy 2019)
Peax: Interactive Visual Pattern Search in Sequential Data Using Unsupervised Deep Representation Learning (2019)BioRXiv
Long-term colonization dynamics of Enterococcus faecalis in implanted devices in research macaques (2018)Applied and Environmental Microbiology
Evaluation of 6 Methods for Aerobic Bacterial Sanitization of Smartphones (2018)Journal of the American Association for Laboratory Animal Science
Reassortment of influenza A viruses in wild birds in Alaska before H5 clade 2.3. 4.4 outbreaks (2017)Emerging Infectious Diseases
A real-time surveillance dashboard for monitoring viral phenotype from sequence (2016)International Journal of Infectious Diseases
Evidence of seasonality in a host-pathogen system: Influenza across the annual cycle of wild birds (2016)Integrative and Comparative Biology
A point mutation in the polymerase protein PB2 allows a reassortant H9N2 influenza isolate of wild-bird origin to replicate in human cells (2016)Infection, Genetics and Evolution
New England harbor seal H3N8 influenza virus retains avian-like receptor specificity (2016)Scientific Reports
Ecosystem interactions underlie the spread of avian influenza a viruses with pandemic potential (2016)PLOS Pathogens
Transmission of influenza reflects seasonality of wild birds across the annual cycle (2016)Ecology Letters
Reticulate evolution is favored in influenza niche switching (2016)PNAS
Genetic characterization of a rare H12N3 avian influenza virus isolated from a green-winged teal in Japan (2015)Virus Genes